CESSHIV-1 database

General information on HIV-1 isolate

# 3175

Accession number	AY047302
Name	TV008
Subtype	C
Country	South Africa (Zimbabwe)
Sampling year	1998
Patient	TV008

AY047302 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actgggtctc tctaggtgga ccagatctga gcccgggagc tctctggcta cttagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AY047303(#3176)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy