CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 677
Accession number AY586549
Name Cu87
SubtypeG
CountryCuba
Sampling year 1999
PatientCU87

AY586549 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gtaggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy