CESSHIV-1 database

General information on HIV-1 isolate

# 2817

Accession number	AY610962
Name	03SP99938
Subtype	F
Country	Spain (Argentina)
Sampling year	2003

AY610962 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcctgt actgggtctc tctagttaga ccagatttga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

FJ771010(#1855)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy