CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3138
Accession number AY611004
Name 03SP119304
SubtypeG
CountrySpain (Equatorial Guinea)
Sampling year 2003

AY611004 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcaggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

FJ614982(#2398) FJ614987(#2402) FJ614988(#2403)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012