CESSHIV-1 database

General information on HIV-1 isolate

# 2128

Accession number	AY932658
Name	TZLM677
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	677

AY932658 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt tctgggtctc tcttgttaga ccagatc-gag cccgggagct ctctggctag c-agggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy