CESSHIV-1 database

General information on HIV-1 isolate

# 1087

Accession number	BD187399
Name	93JP_NH1
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2003
Patient	NH1
Comments	Patent

BD187399 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcttgt actgggtctc tcttgttaga ccaggtc-gag cccgggagct ctctggctag caagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

AB052601(#1057) AB052603(#1059) AB052995(#168) AB070352(#163) AB070353(#164) AB253684(#862) AB253685(#863) AB253686(#864) AB253697(#875) AB253700(#878) AB253704(#882) AB253707(#885) AB253708(#886) AB253710(#888) AB253715(#893) AB485652(#2732) AF259954(#85) AF259955(#86) U51284(#2504)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy