CESSHIV-1 database

General information on HIV-1 isolate

# 2986

Accession number	DQ287285
Name	C49_11_2001
Subtype	B
Country	Australia
Sampling year	2001
Patient	C49

DQ287285 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttgga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ287273(#2976) DQ287275(#2978) DQ287277(#2824) DQ287278(#2980) DQ287279(#3140) DQ287281(#2982) DQ287282(#2983) DQ287284(#2985)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy