CESSHIV-1 database

General information on HIV-1 isolate

# 2987

Accession number	DQ287286
Name	C49_8_2002
Subtype	B
Country	Australia
Sampling year	2002
Patient	C49

DQ287286 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AB480695(#2720) AF538302(#1075) DQ287287(#2988) EF370332(#1775) EF370350(#1786) EF370371(#1797) EF370387(#1803) EU047618(#1820) EU047684(#1880) EU047694(#1889) EU047696(#2275) EU047700(#1891) U37270(#2500)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy