CESSHIV-1 database

General information on HIV-1 isolate

# 3009

Accession number	DQ848364
Name	ib2
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848364 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctact ttctgcctgt actaagtctc tctagttaga ccagatctga gcctaagagc tctctagcta actaaagaac ccactgctta agcctcaata aagcttgcct taagtgcttt aagtaatgt

Isolates with identical sequences of region:

DQ848378(#3733) DQ848384(#3097)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy