CESSHIV-1 database

General information on HIV-1 isolate

# 3083

Accession number	DQ848369
Name	ib11
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848369 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagctcgcct tgagtgcttt aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy