CESSHIV-1 database

General information on HIV-1 isolate

# 3092

Accession number	DQ848379
Name	ib17
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848379 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

DQ848363(#3008) DQ848365(#3079) DQ848368(#3082) DQ848377(#3091) DQ848380(#3093) DQ848383(#3096) DQ848385(#3098) DQ848386(#3099) EF370184(#2228) EF370187(#2229) EF370289(#1743) EF370300(#1751) U80532(#2551) U81472(#2577)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy