CESSHIV-1 database

General information on HIV-1 isolate

# 3104

Accession number	DQ848392
Name	mc5
Subtype	B
Country	USA
Sampling year	1990
Patient	C-mother

DQ848392 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctact ttttgcctgt actgggtctc tctagttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy