CESSHIV-1 database

General information on HIV-1 isolate

# 3106

Accession number	DQ848394
Name	mc8
Subtype	B
Country	USA
Sampling year	1990
Patient	C-mother

DQ848394 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc tagtagtgt

Isolates with identical sequences of region:

DQ848389(#3102) DQ848390(#2826) DQ848391(#3103) DQ848393(#3105) DQ848395(#3107) DQ848396(#3108) DQ848397(#3109) DQ848398(#3110) DQ848399(#3111) DQ848400(#3112) DQ848401(#3113) DQ848402(#3114) DQ848403(#3115)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy