CESSHIV-1 database

General information on HIV-1 isolate

# 3116

Accession number	DQ848404
Name	ic1
Subtype	B
Country	USA
Sampling year	1990
Patient	C-child

DQ848404 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagctaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848405(#3117) DQ848406(#3118) DQ848407(#3119) DQ848408(#3120) DQ848409(#3121) DQ848411(#3123) DQ848416(#3128) DQ848422(#3010)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy