CESSHIV-1 database

General information on HIV-1 isolate

# 3060

Accession number	DQ848423
Name	ic20
Subtype	B
Country	USA
Sampling year	1990
Patient	C-child

DQ848423 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagctaga ccagatctga gcctgggagc tctctggttg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848410(#3122) DQ848412(#3124) DQ848413(#3125) DQ848414(#3126) DQ848415(#3127) DQ848417(#3129) DQ848420(#3132)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy