CESSHIV-1 database

General information on HIV-1 isolate

# 3624

Accession number	DQ848458
Name	id18
Subtype	B
Country	USA
Sampling year	1990
Patient	D-child

DQ848458 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttt-gcctgtt ctgggtctct ctggttagac cagatctgag cctgggagct ctctggttaa ctggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

Isolates with identical sequences of region:

DQ848465(#3631)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy