CESSHIV-1 database

General information on HIV-1 isolate

# 3643

Accession number	DQ848477
Name	me12
Subtype	B
Country	USA
Sampling year	1990
Patient	E-mother

DQ848477 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttgtgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848468(#3634) DQ848473(#3639)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy