CESSHIV-1 database

General information on HIV-1 isolate

# 3665

Accession number	DQ848499
Name	mg8
Subtype	B
Country	USA
Sampling year	1990
Patient	G-mother

DQ848499 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcccgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848504(#3670) DQ848505(#3671) DQ848506(#3672) DQ848507(#3673) DQ848508(#3674) DQ848509(#3675) DQ848511(#3677)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy