CESSHIV-1 database

General information on HIV-1 isolate

# 3680

Accession number	DQ848514
Name	ig11
Subtype	B
Country	USA
Sampling year	1990
Patient	G-child

DQ848514 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcccgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct taagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848515(#3681) DQ848516(#3682) DQ848517(#3683) DQ848518(#3684) DQ848521(#3687) DQ848523(#3689)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy