CESSHIV-1 database

General information on HIV-1 isolate

# 3694

Accession number	DQ848528
Name	mh5
Subtype	B
Country	USA
Sampling year	1990
Patient	H-mother

DQ848528 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagttaga ccagatctga gcctgggagc tctctggctg gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtat

Isolates with identical sequences of region:

DQ848529(#3695)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy