CESSHIV-1 database

General information on HIV-1 isolate

# 3726

Accession number	DQ848560
Name	i2h11
Subtype	B
Country	USA
Sampling year	1990
Patient	H2-child

DQ848560 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagttaga ccagatctga gcctgggagc tctctggctg gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848524(#3690) DQ848531(#3697) DQ848533(#3699) DQ848534(#3700) DQ848536(#3702) DQ848537(#3703) DQ848538(#3704) DQ848539(#3705) DQ848540(#3706) DQ848541(#3707) DQ848543(#3709) DQ848544(#3710) DQ848545(#3711) DQ848546(#3712) DQ848547(#3713) DQ848548(#3714) DQ848551(#3717) DQ848552(#3718) DQ848554(#3720) DQ848555(#3721) DQ848556(#3722) DQ848559(#3725) DQ848562(#3728) DQ848563(#3729)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy