CESSHIV-1 database

General information on HIV-1 isolate

# 3727

Accession number	DQ848561
Name	i2h12
Subtype	B
Country	USA
Sampling year	1990
Patient	H2-child

DQ848561 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagataga ccagatctga gcctgggagc tctctggctg gctagggaac ccactgctta agcctcaata aagcttgcct ttgagtgctt caagtactgt 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy