CESSHIV-1 database

General information on HIV-1 isolate

# 757

Accession number	DQ859180
Name	FJ054
Subtype	CRF01_AE
Country	China
Sampling year	2006
Patient	FJ054

DQ859180 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct cttcgcttgt aatgggtctg tcttgttaga ccaggtc-gag cccgggagct ctctggctag caagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy