CESSHIV-1 database

General information on HIV-1 isolate

# 3458

Accession number	EF125629
Name	AS1M6ltrc29
Subtype	B
Country	USA
Sampling year	2003
Patient	AS1

EF125629 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

AB287364(#930) AB287365(#931) EF125628(#3457) EF125630(#3459) EF370251(#2242) EF370327(#2259) EF370328(#1771) EU047638(#2271) EU047652(#1848) EU047653(#1849)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy