CESSHIV-1 database

General information on HIV-1 isolate

# 1765

Accession number	EF370320
Name	01CJI7_2905
Subtype	B
Country	South Korea
Sampling year	2001
Patient	CJI

EF370320 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttt-gcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

Isolates with identical sequences of region:

AF042100(#122) EF370319(#1764) EU047679(#1875)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy