CESSHIV-1 database

General information on HIV-1 isolate

# 1780

Accession number	EF370341
Name	99KJG5_2725
Subtype	B
Country	South Korea
Sampling year	1999
Patient	KJG(KR511)

EF370341 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatcaga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AY970948(#1153) AY970949(#1154) AY970950(#451)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy