CESSHIV-1 database

General information on HIV-1 isolate

# 1784

Accession number	EF370345
Name	00KJU11_2727
Subtype	B
Country	South Korea
Sampling year	2000
Patient	KJU

EF370345 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatttga gcctgggagc tctctggcta gctagagaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy