CESSHIV-1 database

General information on HIV-1 isolate

# 3018

Accession number	EF592600
Name	C34
Subtype	C
Country	India
Submitted to NCBI	2007

EF592600 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatccga gcccgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgttct gagcagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy