CESSHIV-1 database

General information on HIV-1 isolate

# 1877

Accession number	EU047681
Name	07KKT2_3187
Subtype	B Korean
Country	South Korea
Sampling year	2007
Patient	KKT

EU047681 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EF370326(#1770) EF370334(#2260) EF370348(#2261)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy