CESSHIV-1 database

General information on HIV-1 isolate

# 3283

Accession number	GQ386795
Name	H1_5p11
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

GQ386795 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttt-gcctgta ctgggtctct cttgttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

Isolates with identical sequences of region:

AF256209(#1072) AF256210(#1073) GQ386788(#3276) GQ386789(#3277) GQ386790(#3278) GQ386791(#3279) GQ386794(#3282)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy