CESSHIV-1 database

General information on HIV-1 isolate

# 3134

Accession number	M58173
Name	L1_01
Subtype	B
Country	France
Sampling year	1985
Patient	P1

M58173 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggata actagggaac ccactgctta agcctcaata aagcttgcct tgggtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy