CESSHIV-1 database

General information on HIV-1 isolate

# 3753

Accession number	M58197
Name	L3_03
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58197 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttt-gcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

Isolates with identical sequences of region:

AB485638(#2741) L28882(#2450) L28887(#2455)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy