CESSHIV-1 database

General information on HIV-1 isolate

# 3798

Accession number	M58243
Name	V2_08
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58243 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AB221005(#685) AB253432(#914) AB485640(#2743) AF003888(#1197) AF004394(#22) AF538303(#1076) AX316202(#1083) AX772015(#1086) AY610991(#2052) AY851669(#2091) AY851682(#2103) BD410064(#1089) CS793683(#3475) CS793684(#1093) D86068(#1094) DM461230(#3476) DM461231(#3477) DQ672623(#1433) DQ848467(#3633) DQ848471(#3637) DQ848472(#3638) DQ848491(#3657) EF363124(#966) EU047616(#1818) FB341548(#1902) FB707281(#1903) FJ432066(#3054) HH978650(#3848) K02007(#20) K02083(#70) K03455(#1182) L28869(#2437) L28870(#2438) L28871(#2439) L28872(#2440) L28873(#2441) L28877(#2445) L28879(#2447) L28908(#2476) L31963(#2368) M58174(#3443) M58175(#3734) M58180(#3739) M58181(#2969) M58190(#3747) M58193(#3749) M58195(#3751) M58199(#3755) M58203(#3759) M58205(#3761) M58206(#3762) M58209(#3765) M58236(#3791) M58237(#3792) M58238(#3793) M58240(#3795) M58241(#3796) M58242(#3797) M58244(#3799) M58245(#3800) M58247(#3802) M58249(#3804) M58250(#3805) M58251(#3806) M58253(#3808) M58256(#3811) M58266(#3821) M58275(#3830) U24466(#2380) U24467(#2381) U24468(#2488) U24469(#2489) U24470(#2490) U24471(#2491) U24472(#2492) U24473(#2493) U24478(#2495) U24479(#2496) U24480(#2497) U73100(#2525) U80510(#2529) U80516(#2535) U80519(#2538) U80521(#2540) U80530(#2549) U80534(#2553) U81464(#2569) U81465(#2570) U81470(#2575) X01762(#64)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy