CESSHIV-1 database

General information on HIV-1 isolate

# 3824

Accession number	M58269
Name	V3_21
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58269 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatccga gcctgggagc tctctggcta gctagggaac ccactgctta ancctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy