CESSHIV-1 database

General information on HIV-1 isolate

# 2550

Accession number	U80531
Name	TPV
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	TP5

U80531 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tcttgttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF256204(#1070) AF256206(#82) AF256207(#83) AF256208(#1071) AY932713(#2183) GQ386779(#3264) GQ386780(#3265) GQ386781(#3269) GQ386782(#3270) GQ386783(#3271) GQ386784(#3272) GQ386785(#3273) GQ386786(#3274) GQ386787(#3275) GQ386792(#3280) GQ386793(#3281)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy