CESSHIV-1 database

General information on HIV-1 isolate

# 2578

Accession number	U81473
Name	VE20NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	20

U81473 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

AB287372(#938) DQ295193(#570) EF370222(#1717) EF370226(#2238) EF370273(#1740) EF370274(#1741) EF370275(#2249) EF370311(#1759) EF370338(#1777) EF370370(#2944) EF370372(#1798) EU047670(#1868) EU047671(#2843) EU047672(#1869)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy