CESSHIV-1 DATABASE

General information on HIV-1 isolate

# 273

Accession number	AB098330
Name	pUG031-A1
Subtype	A1
Country	Uganda
Submitted to NCBI	2002
Patient	31

AB098330 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

Isolates with identical sequences of region:

A07116(#1104) AB052603(#1059) AB052611(#1067) AB052867(#124) AB098331(#274) AB231896(#737) AB231898(#739) AB253426(#909) AB253427(#910) AB253428(#911) AB253635(#758) AB253636(#759) AB253637(#760) AB253638(#761) AB253639(#762) AB253640(#763) AB253642(#765) AB253643(#766) AB253646(#769) AB253647(#770) AB253648(#771) AB253649(#772) AB253650(#773) AB253651(#774) AB253652(#775) AB253653(#776) AB253654(#777) AB253655(#778) AB253656(#779) AB253657(#780) AB253658(#781) AB253659(#782) AB253660(#783) AB253661(#784) AB253662(#785) AB253663(#786) AB253664(#787) AB253665(#788) AB253666(#789) AB253667(#790) AB253668(#791) AB253669(#792) AB253670(#793) AB253671(#794) AB253672(#795) AB253673(#796) AB253674(#797) AB253675(#798) AB253676(#799) AB253677(#800) AB253678(#801) AB253679(#802) AB253680(#803) AB287376(#923) AB287377(#924) AB468575(#1390) AF076474(#66) AF516184(#1415) AJ508597(#296) AJ866556(#537) AY161891(#3217) AY271690(#282) AY857037(#1630) DQ083238(#568) DQ366662(#823) EF036532(#854) EF036534(#856) EU110088(#1033) EU110093(#1038) EU110094(#1039) FJ614994(#2405) FJ615000(#2411) GQ277610(#2763) GQ429818(#3382) GQ429820(#3384) GQ429821(#3385) GQ429823(#3387) GQ429824(#3388) GQ429826(#3390) GQ429828(#3392) GQ429830(#3394) GQ429832(#3396) GQ429834(#3398) GQ429838(#3402) GQ429839(#3403) GQ429841(#3405) GQ429842(#3406) GQ429843(#3407) GQ429848(#3412) GQ429849(#3413) GQ429850(#3414) GQ429853(#3417) GQ429854(#3418) GQ429855(#3419) GQ429856(#3420) GQ429857(#3421) GQ429859(#3423) GQ429860(#3424) GQ429862(#3426) GQ429863(#3427) GQ429864(#3428) X04415(#167)

The optimal secondary structure: