CESSHIV-1 database

General information on HIV-1 isolate

# 273

Accession number	AB098330
Name	pUG031-A1
Subtype	A1
Country	Uganda
Submitted to NCBI	2002
Patient	31

AB098330 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatc-gagc ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgtgtg cccgtctgtt gtttgactct ggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy