CESSHIV-1 database

General information on HIV-1 isolate

# 2756

Accession number	AB485665
Name	BCF-Kita
Subtype	AGKU
Country	DRC
Submitted to NCBI	2009
Patient	KITA

AB485665 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gtgc acacagcaag aggcgagggg cggcgaacgg tgagtacgcc aaatattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB485664(#2755) FJ183726(#2662)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy