CESSHIV-1 database

General information on HIV-1 isolate

# 2756

Accession number	AB485665
Name	BCF-Kita
Subtype	AGKU
Country	DRC
Submitted to NCBI	2009
Patient	KITA

AB485665 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ttaaccctca gatgctgcat aaaagcagcc gcttctcgcc tgtactgggt ctctctagtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

AB485664(#2755)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy