CESSHIV-1 database

General information on HIV-1 isolate

# 58

Accession number	AF067159
Name	94IN11246
Subtype	C
Country	India
Sampling year	1994
Patient	94IN11246

AF067159 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB023804(#71) AF067155(#54) AF067158(#57) AF286229(#102) AY585266(#346) DD033495(#1096) DQ011173(#463) DQ351220(#619) DQ396378(#700) GQ999987(#3377)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy