CESSHIV-1 database

General information on HIV-1 isolate

# 700

Accession number	DQ396378
Name	03ZAPS108MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	108MB

DQ396378 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AB023804(#71) AF067155(#54) AF067158(#57) AF067159(#58) AF286229(#102) AY585266(#346) DD033495(#1096) DQ011173(#463) DQ351220(#619) GQ999987(#3377)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy