CESSHIV-1 database

General information on HIV-1 isolate

# 700

Accession number	DQ396378
Name	03ZAPS108MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	108MB

DQ396378 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagacccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy