CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 75
Accession number AF075703
Name FIN9363
SubtypeF1
CountryFinland (Kenya)
Sampling year 1993
Patient(15)

AF075703 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

DQ358801(#742) GU207884(#3570)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012