CESSHIV-1 database

General information on HIV-1 isolate

# 742

Accession number	DQ358801
Name	01BR087
Subtype	CRF46_BF
Country	Brazil
Sampling year	2001
Patient	BR087

DQ358801 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aat--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AF075703(#75) GU207884(#3570)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy