CESSHIV-1 database

General information on HIV-1 isolate

# 742

Accession number	DQ358801
Name	01BR087
Subtype	CRF46_BF
Country	Brazil
Sampling year	2001
Patient	BR087

DQ358801 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AF408627(#152) AF408630(#155) FJ771007(#2761)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy