CESSHIV-1 database

General information on HIV-1 isolate

# 144

Accession number	AF110978
Name	C-96BW16.26
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW16

AF110978 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gcggcggctg gtgagcacgc caattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy