CESSHIV-1 database

General information on HIV-1 isolate

# 144

Accession number	AF110978
Name	C-96BW16.26
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW16

AF110978 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacgcgaaa gcgaaagtag aaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy