CESSHIV-1 database

General information on HIV-1 isolate

# 1405

Accession number	AF286253
Name	CY049GAG, 94CY049_7G
Subtype	A2
Country	Cyprus
Sampling year	1994
Patient	CY049

AF286253 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg gcggcgactg gtgagtacgc ctaaaatttt tgactagcgg aggctagagg gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy