CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1405
Accession number AF286253
Name CY049GAG, 94CY049_7G
SubtypeA2
CountryCyprus
Sampling year 1994
PatientCY049

AF286253 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggacatgaaa agcgaaagta acagggactc gaaagcgaaa gtt---ccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012